Resources#

• Tutorials for using HyPhy to infer selection with various methods. Detailed descriptions of these methods are available here.

• Book chapters and Powerpoints detailing HyPhy usage:

  • Quantifying Natural Selection in Coding Sequences (2016)
  • HyPhy Book: Estimating selection pressures on alignments of coding sequences (2007)
  • Introduction: Compartmentalization Detection

• Getting help

  • See the current Github Issues page for posting questions or searching queries from other users.
  • The retired (as of 2014) user forum is also available for viewing here.
  • You can also tweet us at @hyphy_software with quick questions.